@article{pearl1989conditional,
title = {Conditional independence and its representations},
author = {Pearl, Judea and Geiger, Dan and Verma, Tom},
journal = {Kybernetika},
volume = {25},
number = {7},
pages = {33--44},
year = {1989},
publisher = {Institute of Information Theory and Automation AS CR},
url = {http://www.kybernetika.cz/content/1989/7/33},
pdf = {journal_papers/pearl1989conditional.pdf}
}
@article{geiger1990identifying,
title = {Identifying independence in {B}ayesian networks},
author = {Geiger, Dan and Verma, Tom and Pearl, Judea},
journal = {Networks},
volume = {20},
number = {5},
pages = {507--534},
year = {1990},
publisher = {Wiley Online Library},
url = {http://onlinelibrary.wiley.com/doi/10.1002/net.3230200504/abstract},
pdf = {journal_papers/geiger1990identifying.pdf}
}
@article{geiger1990logical,
title = {Logical and algorithmic properties of independence and their application to {B}ayesian networks},
author = {Geiger, Dan and Pearl, Judea},
journal = {Annals of Mathematics and Artificial Intelligence},
volume = {2},
number = {1},
pages = {165--178},
year = {1990},
publisher = {Springer},
url = {http://www.springerlink.com/content/p52035l133v1h418},
pdf = {journal_papers/geiger1990logical.pdf}
}
@article{geiger1991axioms,
title = {Axioms and algorithms for inferences involving probabilistic independence},
author = {Geiger, Dan and Paz, Azaria and Pearl, Judea},
journal = {Information and Computation},
volume = {91},
number = {1},
pages = {128--141},
year = {1991},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/089054019190077F},
pdf = {journal_papers/geiger1991axioms.pdf}
}
@article{geiger1993learning,
title = {Learning simple causal structures},
author = {Geiger, Dan and Paz, Azaria and Pearl, Judea},
journal = {International Journal of Intelligent Systems},
volume = {8},
number = {2},
pages = {231--247},
year = {1993}
}
@article{geiger1993logical,
title = {Logical and algorithmic properties of conditional independence and graphical models},
author = {Geiger, Dan and Pearl, Judea},
journal = {The Annals of Statistics},
volume = {21},
number = {4},
pages = {2001--2021},
year = {1993},
publisher = {JSTOR},
url = {http://www.jstor.org/stable/2242326},
pdf = {journal_papers/geiger1993logical.pdf}
}
@article{chickering1995finding,
title = {On finding a cycle basis with a shortest maximal cycle},
author = {Chickering, David Maxwell and Geiger, Dan and Heckerman, David},
journal = {Information processing letters},
volume = {54},
number = {1},
pages = {55--58},
year = {1995},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/002001909400231M},
pdf = {journal_papers/chickering1995finding.pdf}
}
@article{heckerman1995learning,
title = {Learning {B}ayesian networks: The combination of knowledge and statistical data},
author = {Heckerman, David and Geiger, Dan and Chickering, David M.},
journal = {Machine learning},
volume = {20},
number = {3},
pages = {197--243},
year = {1995},
publisher = {Springer},
url = {http://www.springerlink.com/content/g4780rju5922q051},
pdf = {journal_papers/heckerman1995learning.pdf}
}
@article{eliaz1995word,
title = {Word-level recognition of small sets of hand-written words},
author = {Eliaz, Amir and Geiger, Dan},
journal = {Pattern recognition letters},
volume = {16},
number = {10},
pages = {999--1009},
year = {1995},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/016786559500065O},
pdf = {journal_papers/eliaz1995word.pdf}
}
@article{geiger1996probabilistic,
title = {Probabilistic reactive disassembly planning},
author = {Geiger, Dan and Zussmann, Eyal},
journal = {CIRP Annals-Manufacturing Technology},
volume = {45},
number = {1},
pages = {49--52},
year = {1996},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/S0007850607630157},
pdf = {journal_papers/geiger1996probabilistic.pdf}
}
@article{geiger1996knowledge,
title = {Knowledge representation and inference in similarity networks and {B}ayesian multinets},
author = {Geiger, Dan and Heckerman, David},
journal = {Artificial Intelligence},
volume = {82},
number = {1-2},
pages = {45--74},
year = {1996},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/0004370295000143},
pdf = {journal_papers/geiger1996knowledge.pdf}
}
@article{becker1996optimization,
title = {Optimization of Pearl's method of conditioning and greedy-like approximation algorithms for the vertex feedback set problem},
author = {Becker, Ann and Geiger, Dan},
journal = {Artificial Intelligence},
volume = {83},
number = {1},
pages = {167--188},
year = {1996},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/0004370295000046},
pdf = {journal_papers/becker1996optimization.pdf}
}
@article{friedman1997Bayesian,
title = {{B}ayesian network classifiers},
author = {Friedman, Nir and Geiger, Dan and Goldszmidt, Moises},
journal = {Machine learning},
volume = {29},
number = {2},
pages = {131--163},
year = {1997},
publisher = {Springer},
url = {http://www.springerlink.com/content/pg72774318173365/},
pdf = {journal_papers/friedman1997Bayesian.pdf}
}
@article{geiger1997characterization,
title = {A characterization of the {D}irichlet distribution through global and local parameter independence},
author = {Geiger, Dan and Heckerman, David},
journal = {The Annals of Statistics},
pages = {1344--1369},
year = {1997},
publisher = {JSTOR},
url = {http://www.jstor.org/stable/2242526},
pdf = {journal_papers/geiger1997characterization.pdf}
}
@article{bar1998approximation,
title = {Approximation algorithms for the feedback vertex set problem with applications to constraint satisfaction and {B}ayesian inference},
author = {Bar-Yehuda, Reuven and Geiger, Dan and Naor, Seffi and Roth, Ron},
journal = {SIAM Journal on Computing},
volume = {27},
number = {4},
pages = {942--959},
year = {1998},
publisher = {Citeseer},
url = {http://link.aip.org/link/smjcat/v27/i4/p942/s1},
pdf = {journal_papers/bar1998approximation.pdf}
}
@article{geiger1998probabilistic,
title = {Probabilistic relevance relations},
author = {Geiger, Dan and Heckerman, David},
journal = {Systems, Man and Cybernetics, Part A: Systems and Humans, IEEE Transactions on},
volume = {28},
number = {1},
pages = {17--25},
year = {1998},
publisher = {IEEE},
url = {http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=650318&tag=1},
pdf = {journal_papers/geiger1998probabilistic.pdf}
}
@article{geiger1998characterization,
title = {A characterization of the bivariate {W}ishart distribution},
author = {Geiger, Dan and Heckerman, David},
journal = {Probability and Mathematical Statistics},
volume = {18},
number = {1},
pages = {119--131},
year = {1998},
publisher = {WROCLAW UNIVERSITY PRESS},
url = {http://www.math.uni.wroc.pl/~pms/publicationsArticle.php?nr=18.1&nrA=7&ppB=%20119&ppE=%20131},
pdf = {journal_papers/geiger1998characterization.pdf}
}
@article{becker1998automatic,
title = {Automatic selection of loop breakers for genetic linkage analysis},
author = {Becker, Ann and Geiger, Dan and Sch{\"a}ffer, Alejandro},
journal = {Human heredity},
volume = {48},
number = {1},
pages = {49--60},
year = {1998},
publisher = {Citeseer},
url = {http://content.karger.com/ProdukteDB/produkte.asp?Aktion=ShowFulltext&ArtikelNr=22781&Ausgabe=225920&ProduktNr=224250},
pdf = {journal_papers/becker1998automatic.pdf}
}
@article{becker2000randomized,
title = {Randomized algorithms for the loop cutset problem},
author = {Becker, Ann and Bar-Yehuda, Reuven and Geiger, Dan},
journal = {Journal Artificial Intelligence Research},
volume = {12},
pages = {219--234},
year = {2000},
publisher = {Citeseer},
url = {http://www.jair.org/papers/paper638.html},
pdf = {journal_papers/becker2000randomized.pdf}
}
@article{becker2001sufficiently,
title = {A sufficiently fast algorithm for finding close to optimal clique trees},
author = {Becker, Ann and Geiger, Dan},
journal = {Artificial Intelligence},
volume = {125},
number = {1-2},
pages = {3--17},
year = {2001},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/S0004370200000758},
pdf = {journal_papers/becker2001sufficiently.pdf}
}
@article{geiger2001stratified,
title = {Stratified exponential families: graphical models and model selection},
author = {Geiger, Dan and Heckerman, David and King, Henry and Meek, Christopher},
journal = {Annals of Statistics},
pages = {505--529},
year = {2001},
publisher = {JSTOR},
url = {http://www.jstor.org/stable/2674112},
pdf = {journal_papers/geiger2001stratified.pdf}
}
@article{geiger2002parameter,
title = {Parameter priors for directed acyclic graphical models and the characterization of several probability distributions},
author = {Geiger, Dan and Heckerman, David},
journal = {Annals of statistics},
pages = {1412--1440},
year = {2002},
publisher = {JSTOR},
url = {http://www.jstor.org/stable/1558719},
pdf = {journal_papers/geiger2002parameter.pdf}
}
@article{fishelson2002exact,
title = {Exact genetic linkage computations for general pedigrees},
author = {Fishelson, Ma'ayan and Geiger, Dan},
journal = {Bioinformatics},
volume = {18},
number = {suppl 1},
pages = {S189--S198},
year = {2002},
publisher = {Oxford Univ Press},
url = {http://bioinformatics.oxfordjournals.org/content/18/suppl_1/S189.short},
pdf = {journal_papers/fishelson2002exact.pdf}
}
@article{greenspan2004model,
title = {Model-based inference of recombination hotspots in a highly, variable oncogene},
author = {Greenspan, Gideon and Geiger, Dan and Gotch, F. and Bower, M. and Patterson, S. and Nelson, M. and Gazzard, B. and Stebbing, J.},
journal = {Journal of molecular evolution},
volume = {58},
number = {3},
pages = {239--251},
year = {2004},
publisher = {Springer},
url = {http://www.springerlink.com/content/qc6nrd39y6gd0b2p/},
pdf = {journal_papers/greenspan2004model.pdf}
}
@article{fishelson2004optimizing,
title = {Optimizing exact genetic linkage computations},
author = {Fishelson, Ma'ayan and Geiger, Dan},
journal = {Journal of Computational Biology},
volume = {11},
number = {2-3},
pages = {263--275},
year = {2004},
publisher = {Mary Ann Liebert, Inc.},
url = {http://www.liebertonline.com/doi/abs/10.1089/1066527041410409},
pdf = {journal_papers/fishelson2004optimizing.pdf}
}
@article{greenspan2004modelb,
title = {Model-based inference of haplotype block variation},
author = {Greenspan, Gideon and Geiger, Dan},
journal = {Journal of computational biology},
volume = {11},
number = {2-3},
pages = {493--504},
year = {2004},
publisher = {Mary Ann Liebert, Inc.},
url = {http://www.liebertonline.com/doi/abs/10.1089/1066527041410300},
pdf = {journal_papers/greenspan2004modelb.pdf}
}
@article{narkis2004homozygosity,
title = {Homozygosity mapping of lethal congenital contractural syndrome type 2 (LCCS2) to a 6 cM interval on chromosome 12q13},
author = {Narkis, Ginat and Landau, Daniella and Manor, Esther and Elbedour, Khalil and Tzemach, Anna and Fishelson, Ma'ayan and Geiger, Dan and Ofir, Rivka and Carmi, Rivka and Birk, Ohad S.},
journal = {American Journal of Medical Genetics Part A},
volume = {130},
number = {3},
pages = {272--276},
year = {2004},
publisher = {Wiley Online Library},
url = {http://onlinelibrary.wiley.com/doi/10.1002/ajmg.a.30266/full},
pdf = {journal_papers/narkis2004homozygosity.pdf}
}
@article{greenspan2004high,
title = {High density linkage disequilibrium mapping using models of haplotype block variation},
author = {Greenspan, Gideon and Geiger, Dan},
journal = {Bioinformatics},
volume = {20},
number = {suppl 1},
pages = {i137--i144},
year = {2004},
publisher = {Oxford Univ Press},
url = {http://bioinformatics.oxfordjournals.org/content/20/suppl_1/i137.short},
pdf = {journal_papers/greenspan2004high.pdf}
}
@article{jojic2004efficient,
title = {Efficient approximations for learning phylogenetic {HMM} models from data},
author = {Jojic, Vladimir and Jojic, Nebojsa and Meek, Christopher and Geiger, Dan and Siepel, Adam and Haussler, David and Heckerman, David},
journal = {Bioinformatics},
volume = {20},
number = {suppl 1},
pages = {i161--i168},
year = {2004},
publisher = {Oxford Univ Press},
url = {http://bioinformatics.oxfordjournals.org/content/20/suppl_1/i161.short},
pdf = {journal_papers/jojic2004efficient.pdf}
}
@article{rusakov2005asymptotic,
title = {Asymptotic model selection for naive {B}ayesian networks},
author = {Rusakov, Dmitry and Geiger, Dan},
journal = {The Journal of Machine Learning Research},
volume = {6},
pages = {1--35},
year = {2005},
publisher = {JMLR. org},
url = {http://jmlr.csail.mit.edu/papers/v6/rusakov05a.html},
pdf = {journal_papers/rusakov2005asymptotic.pdf}
}
@article{ma2005maximum,
title = {Maximum likelihood haplotyping for general pedigrees},
author = {Fishelson, Ma'ayan and Dovgolevsky, Nickolay and Geiger, Dan},
journal = {Human Heredity},
volume = {59},
pages = {41--60},
year = {2005},
publisher = {Citeseer},
url = {http://content.karger.com/ProdukteDB/produkte.asp?Aktion=ShowAbstract&ProduktNr=224250&Ausgabe=230847&ArtikelNr=84736},
pdf = {journal_papers/ma2005maximum.pdf}
}
@article{mizrachi2005identification,
title = {Identification of a novel locus associated with congenital recessive ichthyosis on 12p11. 2--q13},
author = {Mizrachi-Koren, Mordechai and Geiger, Dan and Indelman, Margarita and Bitterman-Deutsch, Ora and Bergman, Reuven and Sprecher, Eli},
journal = {Journal of investigative dermatology},
volume = {125},
number = {3},
pages = {456--462},
year = {2005},
publisher = {Nature Publishing Group},
url = {http://www.nature.com/jid/journal/v125/n3/abs/5603511a.html},
pdf = {journal_papers/mizrachi2005identification.pdf}
}
@article{slomovic2005polyadenylation,
title = {Polyadenylation and degradation of human mitochondrial {RNA}: the prokaryotic past leaves its mark},
author = {Slomovic, Shimyn and Laufer, David and Geiger, Dan and Schuster, Gadi},
journal = {Molecular and cellular biology},
volume = {25},
number = {15},
pages = {6427--6435},
year = {2005},
publisher = {Am Soc Microbiol},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1190340/},
pdf = {journal_papers/slomovic2005polyadenylation.pdf}
}
@article{sprecher2005mutation,
title = {A mutation in SNAP29, coding for a SNARE protein involved in intracellular trafficking, causes a novel neurocutaneous syndrome characterized by cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma},
author = {Sprecher, Eli and Ishida-Yamamoto, Akemi and Mizrahi-Koren, Mordechai and Rapaport, Debora and Goldsher, Dorit and Indelman, Margarita and Topaz, Orit and Chefetz, Ilana and Keren, Hanni and O'Brien, Timothy J. and Bercovich, Dani and Shalev, Stavit and Geiger, Dan and Bergman, Reuven and Horowitz, Mia and Mandel, Hanna},
journal = {The American Journal of Human Genetics},
volume = {77},
number = {2},
pages = {242--251},
year = {2005},
publisher = {Elsevier},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1224527/},
pdf = {journal_papers/sprecher2005mutation.pdf}
}
@article{wexler2005finding,
title = {Finding approximate tandem repeats in genomic sequences},
author = {Wexler, Ydo and Yakhini, Zohar and Kashi, Yechezkel and Geiger, Dan},
journal = {Journal of Computational Biology},
volume = {12},
number = {7},
pages = {928--942},
year = {2005},
publisher = {Mary Ann Liebert, Inc. 2 Madison Avenue Larchmont, NY 10538 USA},
url = {http://www.liebertonline.com/doi/abs/10.1089/cmb.2005.12.928},
pdf = {journal_papers/wexler2005finding.pdf}
}
@article{geiger2006toric,
title = {On the toric algebra of graphical models},
author = {Geiger, Dan and Meek, Christopher and Sturmfels, Bernd},
journal = {The Annals of Statistics},
volume = {34},
number = {3},
pages = {1463--1492},
year = {2006},
publisher = {Institute of Mathematical Statistics},
url = {http://projecteuclid.org/DPubS?service=UI&version=1.0&verb=Display&handle=euclid.aos/1152540755},
pdf = {journal_papers/geiger2006toric.pdf}
}
@article{greenspan2006modeling,
title = {Modeling haplotype block variation using {M}arkov chains},
author = {Greenspan, Gideon and Geiger, Dan},
journal = {Genetics},
volume = {172},
number = {4},
pages = {2583--2599},
year = {2006},
publisher = {Genetics Soc America},
url = {http://www.genetics.org/content/172/4/2583.full},
pdf = {journal_papers/greenspan2006modeling.pdf}
}
@article{becker2005perfect,
title = {Perfect tree-like {M}arkovian distributions},
author = {Becker, Ann and Geiger, Dan and Meek, Christopher},
journal = {Probability and Mathematical Statistics},
volume = {25},
number = {2},
pages = {231--239},
year = {2006},
publisher = {WROCLAW UNIVERSITY PRESS},
pdf = {journal_papers/becker2005perfect.pdf}
}
@article{silberstein2006online,
title = {Online system for faster multipoint linkage analysis via parallel execution on thousands of personal computers},
author = {Silberstein, Mark and Tzemach, Anna and Dovgolevsky, Nickolay and Fishelson, Ma'ayan and Schuster, Assaf and Geiger, Dan},
journal = {The American Journal of Human Genetics},
volume = {78},
number = {6},
pages = {922--935},
year = {2006},
publisher = {Elsevier},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474109/},
pdf = {journal_papers/silberstein2006online.pdf}
}
@article{zohar2007estimation,
title = {Estimation of flows in flow networks},
author = {Zohar, Ron and Geiger, Dan},
journal = {European journal of operational research},
volume = {176},
number = {2},
pages = {691--706},
year = {2007},
publisher = {Elsevier},
url = {http://www.sciencedirect.com/science/article/pii/S0377221705006740},
pdf = {journal_papers/zohar2007estimation.pdf}
}
@article{slomovic2006polyadenylation,
title = {Polyadenylation of ribosomal {RNA} in human cells},
author = {Slomovic, Shimyn and Laufer, David and Geiger, Dan and Schuster, Gadi},
journal = {Nucleic Acids Research},
volume = {34},
number = {10},
pages = {2966--2975},
year = {2006},
publisher = {Oxford Univ Press},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1474067/},
pdf = {journal_papers/slomovic2006polyadenylation.pdf}
}
@article{birnbaum2006seborrhea,
title = {Seborrhea-like dermatitis with psoriasiform elements caused by a mutation in ZNF750, encoding a putative C2H2 zinc finger protein},
author = {Birnbaum, Ramon Y. and Zvulunov, Alex and Hallel-Halevy, Dafna and Cagnano, Emanuella and Finer, Gal and Ofir, Rivka and Geiger, Dan and Silberstein, Eldad and Feferman, Yael and Birk, Ohad S.},
journal = {Nature Genetics},
volume = {38},
number = {7},
pages = {749--751},
year = {2006},
publisher = {Nature Publishing Group},
url = {http://www.nature.com/ng/journal/v38/n7/abs/ng1813.html},
pdf = {journal_papers/birnbaum2006seborrhea.pdf}
}
@article{geiger2006variational,
title = {A variational inference procedure allowing internal structure for overlapping clusters and deterministic constraints},
author = {Geiger, Dan and Meek, Christopher and Wexler, Ydo},
journal = {Journal of Artificial Intelligence Research},
volume = {27},
number = {1},
pages = {1--23},
year = {2006},
publisher = {AI Access Foundation},
url = {http://www.jair.org/papers/paper2028.html},
pdf = {journal_papers/geiger2006variational.pdf}
}
@article{topaz2006deleterious,
title = {A deleterious mutation in SAMD9 causes normophosphatemic familial tumoral calcinosis},
author = {Topaz, Orit and Indelman, Margarita and Chefetz, Ilana and Geiger, Dan and Metzker, Aryeh and Altschuler, Yoram and Choder, Mordechai and Bercovich, Dani and Uitto, Jouni and Bergman, Reuven and Richard, Gabriele and Sprecher, Eli},
journal = {The American Journal of Human Genetics},
volume = {79},
number = {4},
pages = {759--764},
year = {2006},
publisher = {Elsevier},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1592555/},
pdf = {journal_papers/topaz2006deleterious.pdf}
}
@article{lugassy2006naegeli,
title = {Naegeli-Franceschetti-Jadassohn syndrome and dermatopathia pigmentosa reticularis: two allelic ectodermal dysplasias caused by dominant mutations in KRT14},
author = {Lugassy, Jennie and Itin, Peter and Ishida-Yamamoto, Akemi and Holland, Kristen and Huson, Susan and Geiger, Dan and Hennies, Hans Christian and Indelman, Margarita and Bercovich, Dani and Uitto, Jouni and Bergman, Reuven and McGrath, John A. and Richard, Gabriele and Sprecher, Eli},
journal = {The American Journal of Human Genetics},
volume = {79},
number = {4},
pages = {724--730},
year = {2006},
publisher = {Elsevier},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1592572/},
pdf = {journal_papers/lugassy2006naegeli.pdf}
}
@article{landau2007familial,
title = {Familial steroid-sensitive nephrotic syndrome in Southern Israel: clinical and genetic observations},
author = {Landau, Daniel and Oved, Tal and Geiger, Dan and Abizov, Luba and Shalev, Hanna and Parvari, Ruti},
journal = {Pediatric Nephrology},
volume = {22},
number = {5},
pages = {661--669},
year = {2007},
publisher = {Springer},
url = {http://www.springerlink.com/content/b68mx51609196057/},
pdf = {journal_papers/landau2007familial.pdf}
}
@article{nousbeck2008alopecia,
title = {Alopecia, neurological defects, and endocrinopathy syndrome caused by decreased expression of RBM28, a nucleolar protein associated with ribosome biogenesis},
author = {Nousbeck, Janna and Spiegel, Ronen and Ishida-Yamamoto, Akemi and Indelman, Margarita and Shani-Adir, Ayelet and Adir, Noam and Lipkin, Ehud and Bercovici, Sivan and Geiger, Dan and Van Steensel, Maurice A. and Steijlen, Peter M. and Bergman, Reuven and Bindereif, Albrecht and Choder, Mordechai and Shalev, Stavit and Sprecher, Eli},
journal = {The American Journal of Human Genetics},
volume = {82},
number = {5},
pages = {1114--1121},
year = {2008},
publisher = {Elsevier},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427309/},
pdf = {journal_papers/nousbeck2008alopecia.pdf}
}
@article{bercovici2008panel,
title = {Panel construction for mapping in admixed populations via expected mutual information},
author = {Bercovici, Sivan and Geiger, Dan and Shlush, Liran and Skorecki, Karl and Templeton, Alan},
journal = {Genome Research},
volume = {18},
number = {4},
pages = {661--667},
year = {2008},
publisher = {Cold Spring Harbor Lab},
url = {http://genome.cshlp.org/content/18/4/661.full},
pdf = {journal_papers/bercovici2008panel.pdf}
}
@article{wexler2008variational,
title = {Variational upper and lower bounds for probabilistic graphical models},
author = {Wexler, Ydo and Geiger, Dan},
journal = {Journal of Computational Biology},
volume = {15},
number = {7},
pages = {721--735},
year = {2008},
publisher = {Mary Ann Liebert, Inc. 2 Madison Avenue Larchmont, NY 10538 USA},
url = {http://www.liebertonline.com/doi/abs/10.1089/cmb.2007.0129},
pdf = {journal_papers/wexler2008variational.pdf}
}
@article{renbaum2009spinal,
title = {Spinal muscular atrophy with pontocerebellar hypoplasia is caused by a mutation in the VRK1 gene},
author = {Renbaum, Paul and Kellerman, Efrat and Jaron, Ranit and Geiger, Dan and Segel, Reeval and Lee, Ming and King, Mary Claire and Levy-Lahad, Ephrat},
journal = {The American Journal of Human Genetics},
volume = {85},
number = {2},
pages = {281--289},
year = {2009},
publisher = {Elsevier},
url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2725266/},
pdf = {journal_papers/renbaum2009spinal.pdf}
}
@article{geiger2009speeding,
title = {Speeding up {HMM} algorithms for genetic linkage analysis via chain reductions of the state space},
author = {Geiger, Dan and Meek, Christopher and Wexler, Ydo},
journal = {Bioinformatics},
volume = {25},
number = {12},
pages = {i196--i203},
year = {2009},
publisher = {Oxford Univ Press},
url = {http://bioinformatics.oxfordjournals.org/content/25/12/i196.full},
pdf = {journal_papers/geiger2009speeding.pdf}
}
@article{bercovici2009inferring,
title = {Inferring ancestries efficiently in admixed populations with linkage disequilibrium},
author = {Bercovici, Sivan and Geiger, Dan},
journal = {Journal of Computational Biology},
volume = {16},
number = {8},
pages = {1141--1150},
year = {2009},
publisher = {Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA},
url = {http://www.liebertonline.com/doi/abs/10.1089/cmb.2009.0105},
pdf = {journal_papers/bercovici2009inferring.pdf}
}
@article{genzer2010mammary,
title = {Mammary-digital-nail (MDN) syndrome: a novel phenotype maps to human chromosome 22q12. 3--13.1},
author = {Genzer-Nir, Mira and Khayat, Morad and Kogan, Leonid and Cohen, Hector I. and Hershkowitz, Miriam and Geiger, Dan and Falik-Zaccai, Tzipora C.},
journal = {European Journal of Human Genetics},
volume = {18},
number = {6},
pages = {662--667},
year = {2010},
publisher = {Nature Publishing Group},
url = {http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2987341/},
pdf = {journal_papers/genzer2010mammary.pdf}
}
@article{gunay2010gray,
title = {Gray platelet syndrome: natural history of a large patient cohort and locus assignment to chromosome 3p},
author = {Gunay-Aygun, Meral and Zivony-Elboum, Yifat and Gumruk, Fatma and Geiger, Dan and Cetin, Mualla and Khayat, Morad and Kleta, Robert and Kfir, Nehama and Anikster, Yair and Chezar, Judith and
Arcos-Burgos, Mauricio and Shalata, Adel and Stanescu, Horia and Manaster, Joseph and Arat, Mutlu and Edwards, Hailey and Freiberg, Andrew S. and
Hart, P. Suzanne and Riney, Lauren C. and Patzel, Katherine and Tanpaiboon, Pranoot and Markello, Tom and Huizing, Marjan and Maric, Irina and
Horne, McDonald and Kehrel, Beate E. and Jurk, Kerstin and Hansen, Nancy F. and Cherukuri, Praveen F. and Jones, Marypat and Cruz, Pedro and
Mullikin, Jim C. and Nurden, Alan and White, James G. and Gahl, William A. and Falik-Zaccai, Tzippora},
journal = {Blood},
volume = {116},
number = {23},
pages = {4990--5001},
year = {2010},
publisher = {American Society of Hematology},
url = {http://bloodjournal.hematologylibrary.org/content/116/23/4990.full},
pdf = {journal_papers/gunay2010gray.pdf}
}
@article{bercovici2010estimating,
title = {Estimating genome-wide {IBD} sharing from {SNP} data via an efficient hidden {M}arkov model of {LD} with application to gene mapping},
author = {Bercovici, Sivan and Meek, Christopher and Wexler, Ydo and Geiger, Dan},
journal = {Bioinformatics},
volume = {26},
number = {12},
pages = {i175--i182},
year = {2010},
publisher = {Oxford Univ Press},
url = {http://bioinformatics.oxfordjournals.org/content/26/12/i175.full},
pdf = {journal_papers/bercovici2010estimating.pdf}
}
@article{shlush2010admixture,
title = {Admixture mapping of end stage kidney disease genetic susceptibility using estimated mutual information ancestry informative markers},
author = {Shlush, Liran and Bercovici, Sivan and Wasser, Walter G. and Yudkovsky, Guennady and Templeton, Alan and Geiger, Dan and Skorecki, Karl},
journal = {BMC Medical Genomics},
volume = {3},
number = {1},
pages = {47},
year = {2010},
publisher = {BioMed Central Ltd},
url = {http://www.doaj.org/doaj?func=abstract&id=657337},
pdf = {journal_papers/shlush2010admixture.pdf}
}
@article{baras2011automatic,
title = {Automatic boosting of cross-product coverage using {B}ayesian networks},
author = {Baras, Dorit and Fine, Shai and Fournier, Laurent and Geiger, Dan and Ziv, Avi},
journal = {International Journal on Software Tools for Technology Transfer (STTT)},
volume = {13},
number = {3},
pages = {247--261},
year = {2011},
publisher = {Springer},
url = {http://www.springerlink.com/content/e0433613218u1212/},
pdf = {journal_papers/baras2011automatic.pdf}
}
@article{markus2011integration,
title = {Integration of {SNP} genotyping confidence scores in {IBD} inference},
author = {Markus, Barak and Birk, Ohad and Geiger, Dan},
journal = {Bioinformatics},
volume = {27},
number = {20},
pages = {2880--2887},
year = {2011},
publisher = {Oxford Univ Press},
url = {http://bioinformatics.oxfordjournals.org/content/27/20/2880.short},
pdf = {journal_papers/markus2011integration.pdf}
}
@article{bercovici2011admixture,
title = {Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled {DNA}},
author = {Bercovici, Sivan and Geiger, Dan},
journal = {Journal of Computational Biology},
volume = {18},
number = {3},
pages = {237--249},
year = {2011},
publisher = {Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA},
url = {http://www.liebertonline.com/doi/abs/10.1089/cmb.2010.0250},
pdf = {journal_papers/bercovici2011admixture.pdf}
}
@article{weissbrod2011genetic,
title = {Genetic Linkage Analysis in the Presence of Germline Mosaicism},
author = {Weissbrod, Omer and Geiger, Dan},
journal = {Statistical Applications in Genetics and Molecular Biology},
volume = {10},
number = {1},
pages = {46},
year = {2011},
publisher = {bepress},
url = {http://www.bepress.com/sagmb/vol10/iss1/art46/},
pdf = {journal_papers/weissbrod2011genetic.pdf}
}
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